Upgrading to Sequoia makes private MAC addresses and MAC address rotation the default behaviour on all networks. This may cause Magma to fail to run on such a machine, as the MAC addresses no longer match those that were used to generate the magmapassfile.
This issue can be fixed by upgrading to Magma V2.28-14 or later. If you are unable to do so immediately, then a workaround is to turn off this setting for your computer's network, as described in Apple's article about this feature.
Upgrading to El Capitan removes the link to magma from /usr/bin, with the result that typing magma into a terminal window will no longer find it. To fix this, create the file /etc/paths.d/Magma containing the single line
/Applications/MagmaAfter doing so, magma should once again be runnable by typing magma in a terminal window